PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400035188
Common NameLOC102586089
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TCP
Protein Properties Length: 233aa    MW: 25079.1 Da    PI: 7.2367
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400035188genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.82.3e-3922113289
                   TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                           a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+   a+ s+s+++  s + 
  PGSC0003DMP400035188  22 APKRKSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGNGTIPASALaAAGPSVSQQG-ISVSa 109
                           789******************************************************************88843333333333.22222 PP

                   TCP  89 ...k 89 
                              +
  PGSC0003DMP400035188 110 glqQ 113
                           3321 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.1E-3227126IPR005333Transcription factor, TCP
PROSITE profilePS5136928.0162882IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MEIKDLQIEI AEKDEAKKHQ LAPKRKSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG  60
HKSDGETIQW LLQQAEPSII AATGNGTIPA SALAAAGPSV SQQGISVSAG LQQNMDGSIS  120
NSSSRTSWPM AQLATTGIWP PSAPDVTNFG HNLGTESLQK ISFPVFDLPS TNLSFTSMLG  180
ATNLPGLELG LSQDAHMNSQ SLNQIYQQMG HSRMHQQQQP SPEDDNSQGS GQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00636PBMTransfer from Glyma.19G095300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154571e-131AC215457.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02SLe0061K08, complete sequence.
GenBankHG9755141e-131HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006338808.21e-171PREDICTED: transcription factor TCP20
SwissprotQ9LSD59e-66TCP20_ARATH; Transcription factor TCP20
TrEMBLM1BSZ41e-171M1BSZ4_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000522031e-171(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27010.15e-67TCP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]